The Evolution of Adenine Synthesis

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Nucleic Acids are Critical to Life

The first living organism either needed to find adenine (and the other nucleic acids) in its surroundings or synthesize them from more common chemicals.

       In the laboratory, chemists can create adenine in an enclosed vessel from a concentrated solution of hydrogen cyanide and ammonia. Other nucleic acids can then be created from adenine. The first form of life would be destroyed by these conditions, and because there is simply no way to concentrate volatile gases in an open environment (like the primitive earth), the conditions required to create large yields of adenine in the lab do not model the conditions on the primitive earth.

   Miller has suggested that adenine was synthesized from hydrogen cyanide at very cold temperatures as water freezes, melts and re-freezes. While this process may have produced some adenine, if the entire body of water ever melts, then the adenine will again be too dilute. Furthermore, the freezing cycles described above are limited to small ponds because the salts present in the ocean interfere with adenine synthesis. Despite these concerns, adenine has been found in very small concentrations in several meteorites. So nature can make it in small quantities; as a result, some adenine was probably dissolved in the primitive ocean.

        The problem is one of dilution. If the first living molecule does not have the ability to synthesize adenine, then it will have to search the ocean for decades, collecting adenine (and the other nucleic acids) before it can replicate. Since the first living molecule must be simple, it would be more reasonable to speculate that the nucleic acids float by the living molecule, and it simply collects them. Such a molecule may have to wait several thousand years to accumulate the nucleic acids that it needs to replicate just once. This is not a reasonable model for a living system. The lifetime of the chemicals that make up the living molecule (assuming it is an RNA molecule) is very short (see chapter 9). So such a molecule will not exist long enough to replicate once.

        Suppose instead that the primordial soup exists locally in a small pond or puddle. In theory, with the appropriate concentration mechanisms in place, such a puddle may have a concentration of nucleic acids many orders of magnitude higher than that of the primitive ocean. If life evolves in the puddle, it will quickly deplete the supply of free nucleic acids as it replicates. It will then run into the dilution problem outlined in the previous paragraph.

         This argument and several others like it suggest that life was never as simple as many scientists have theorized. The enzymes that synthesize adenine and the other nucleic acids almost certainly had to exist either before or coincidentally with the origin life. Furthermore, there is quite a bit of evidence that suggests that these enzymes did exist. Every single living thing (with the exception of a few parasites who have lost the genes) shares the same genes that encode the enzymes responsible for making nucleic acids. This means that the genes responsible for the synthesis of adenine existed in the common ancestor to all living things, 2.5 to 4 billion years ago.

Figure 13.1: The Tree of Life

tree-life-1.GIF (21812 bytes)

 

For the reasons outlined above, life on the primitive earth was not possible without the genes responsible for making nucleic acids, and these genes may have actually proceeded life (figure 13.1). Even if life originated first, the problem remains unsolvable. The metabolic pathway that will be discussed next is perhaps the best example of an irreducibly complex system that can be found in life. The synthesis of adenine requires 11 enzymes. If a single enzyme is missing, the yield of adenine is zero. Therefore, all 11 enzymes must evolve together and become at least marginally functional before natural selection can preserve and optimize the system. The implication is that the very first step required to create the molecular knowledge is insurmountable. Chance and natural selection cannot explain the evolution of this metabolic pathway.

 

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