Intelligent Design vs Evolution Theory

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>Chap5 Primordial Soup Evolution
>Chap6 Chemistry and Entropy
>Chap7 The Second Law
>Chap8 DNA, RNA structure
>Chap9 Origin of  Life
>Chap10 RNA Self Replication
>Chap11 Primordial Soup Myth
>Chap12 Irreducible Complexity
>Chap13 Adenine Synthesis
>Chap14 ATP synthesis
>Chap15 Natural Selection
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Chemical Evolution

This book will also evaluate another hypothesis put forth in the 19th century. This hypothesis attempts to explain the origin of life and its basic premise is as follows:
    The early earth’s atmosphere was different from today in that no free oxygen was available. Under these circumstance, energy sources like sunlight and electrostatic discharges might create the chemicals necessary for life (chemical evolution). As these chemicals were concentrated in a small pond or puddle (the primordial soup), they organized themselves in such a way to form the first living organism. Because life is very complex, the first living thing is usually assumed to be a self replicating chemical rather than a living cell. Because the first living thing was able to replicate itself, it evolved into life as it exists today.
    This hypothesis or some form of it is found in almost all biology books where it is put forth as the generally accepted theory. Yet in the scientific journals, scientists routinely dismiss many aspects of the hypothesis as highly improbable (Shapiro 1995 and 1999; Miller 1995 and 1998; Joyce 1984 and 1989; Nissenbaum 1975; Ferris 1987; Joyce and Orgel 1999; Thaxton:1984). When it comes to chemical evolution and the origin of life, science just does not have the answer.
    One of the first experiments concerning the origin of life was conducted in 1953 by Stanley Miller. Miller created several amino acids (the building blocks that life uses to make proteins) in an electrostatic discharge chamber. The experiments conducted since Miller have demonstrated how difficult it is to create the biological precursors required for life. While several amino acids can be created under plausible conditions, proteins cannot be. Furthermore, DNA is much more problematic because its building blocks are difficult to create. Many of these building blocks are unstable and decay rapidly. Science has yet to offer a plausible explanation for how these hard to make and easy to destroy chemicals accumulated in the primordial soup (see references 3,4,5, 6, 7, 8 and 13 on page 15, and chapter 9).
    The most prevalent myth concerning chemical evolution suggests that a continuous flow of energy through a complex system of nonliving chemicals will promote the formation of biologically relevant molecules. The researchers who hold to these views suggest that life arose spontaneously when these biological precursors combined in a small pond or puddle several billion years ago. While such energy flows are critical to the survival of life today, it is not clear how they solve the mystery of life’s origin. Life knows how to use these energy flows to do work. Such knowledge is completely lacking from a system that only contains nonliving chemicals. Plentiful energy sources if anything do more harm than good. Sunlight bombarding a small pond on the earth 4 billions years ago is much more likely to destroy any useful biological molecules than create one (see for example Fox, Molecular Evolution and the Origin of Life, p37).
    Surprisingly, such difficulties are often overlooked; as a result, many biologists mistakenly believe that it is quite easy to synthesize all of the required biological molecules. Nevertheless, a quick review of the relevant literature reveals that this is not true. For example, to synthesize adenine (one of the most important chemicals found in DNA and RNA), chemists start with a concentrated solution of hydrogen cyanide and ammonia. Concentrating ammonia is not an easy task since it is a gas that boils at sub-freezing temperatures, and it also decays rapidly in the presence of sunlight. Furthermore, concentrating hydrogen cyanide in the presence of water is impossible since it reacts with water quite readily to create formic acid. Scientists tend to focus on the fact that adenine can be synthesized in a laboratory and ignore the fact that the conditions required for its synthesis did not exist on the primitive earth. 3,4,6
    After 50 years of investigation no plausible prebiotic path exists to synthesize cytosine, ribose or deoxyribose (three critical subunits of DNA and RNA). The problems with ribose and cytosine synthesis are so severe that Miller and several others have suggested that the first self replicating molecule probably contained neither.7, 8      Biological molecules may contain thousands of subunits all linked together by chemical bonds. Coercing the subunits to form a large biological molecule like DNA or RNA is not easy. These problems are often discussed in scientific journals like Nature, Science, PNAS, and the Journal of Molecular Biology. For example, even today, investigators have yet to identify a plausible prebiotic method to link cytosine, thymine or uracil to ribose (a step necessary for DNA and RNA synthesis).11 Nevertheless, not finding an answer is not news. So only the scientists who read these journals are aware of the difficulties involved.
    Finally, the greatest challenge to the origin of life lies not with creating the chemical precursors, but instead with creating the required knowledge. The chemicals that make up life contain useful information, and it is this knowledge that allows life to propagate. The implication is that even if a few of the biological precursors required for life existed in the primordial soup, such precursors would not contain the knowledge necessary to live and evolve.
    Joyce and Orgel sum up the situation best “After dreaming of self-replicating ribozymes emerging from pools of random polynucleotides, and having nightmares about the difficulties that must have been overcome for RNA replication to occur in a realistic prebiotic soup, we awaken to the cold light of day . . . It must be said that the details of this process remain obscure and are not likely to be known in the near future.” - The RNA World, p72-73.

 

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